IL_7QIZ_297
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7QIZ|1|S2|C|1277, 7QIZ|1|S2|U|1437, 7QIZ|1|S2|G|1440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_297 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0984
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|U|1275
7QIZ|1|S2|G|1276
7QIZ|1|S2|C|1277
7QIZ|1|S2|A|1278
7QIZ|1|S2|U|1279
7QIZ|1|S2|G|1280
7QIZ|1|S2|G|1281
*
7QIZ|1|S2|U|1435
7QIZ|1|S2|C|1436
7QIZ|1|S2|U|1437
7QIZ|1|S2|G|1438
7QIZ|1|S2|U|1439
7QIZ|1|S2|G|1440
7QIZ|1|S2|A|1441
7QIZ|1|S2|U|1442
7QIZ|1|S2|G|1443
Current chains
- Chain S2
- 18S
Nearby chains
- Chain NA
- KH type-2 domain-containing protein
- Chain PA
- S10_plectin domain-containing protein
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
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