IL_7QP6_021
3D structure
- PDB id
- 7QP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 48S initiation complex in open state (h48S AUG open)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7QP6|1|A|U|361, 7QP6|1|A|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QP6_021 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.1365
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7QP6|1|A|U|359
7QP6|1|A|A|360
7QP6|1|A|U|361
7QP6|1|A|C|362
7QP6|1|A|A|363
7QP6|1|A|A|364
*
7QP6|1|A|U|396
7QP6|1|A|G|397
7QP6|1|A|A|398
7QP6|1|A|C|399
7QP6|1|A|C|400
7QP6|1|A|A|401
7QP6|1|A|C|402
7QP6|1|A|G|403
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain R
- 40S ribosomal protein S8
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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