IL_7QVP_043

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7QVP|1|L5|G|748, 7QVP|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_043 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1795

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QVP|1|L5|G|745
7QVP|1|L5|A|746
7QVP|1|L5|A|747
7QVP|1|L5|G|748
7QVP|1|L5|G|749
7QVP|1|L5|U|750
7QVP|1|L5|G|751
7QVP|1|L5|G|752
*
7QVP|1|L5|U|911
7QVP|1|L5|G|912
7QVP|1|L5|U|913
7QVP|1|L5|U|914
7QVP|1|L5|A|915
7QVP|1|L5|C|916
7QVP|1|L5|A|917
7QVP|1|L5|G|918
7QVP|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a