IL_7QVP_117

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7QVP|1|L5|A|3663, 7QVP|1|L5|U|3679, 7QVP|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_117 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0836

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7QVP|1|L5|C|3660
7QVP|1|L5|G|3661
7QVP|1|L5|A|3662
7QVP|1|L5|A|3663
7QVP|1|L5|G|3664
7QVP|1|L5|G|3665
*
7QVP|1|L5|U|3677
7QVP|1|L5|G|3678
7QVP|1|L5|U|3679
7QVP|1|L5|U|3680
7QVP|1|L5|G|3681
7QVP|1|L5|A|3682
7QVP|1|L5|C|3683
7QVP|1|L5|G|3684

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA