IL_7QVP_227

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

7QVP|1|L6|G|1625, 7QVP|1|L6|A|1637, 7QVP|1|L6|A|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_227 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.1068

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7QVP|1|L6|G|1624
7QVP|1|L6|G|1625
7QVP|1|L6|G|1626
*
7QVP|1|L6|U|1636
7QVP|1|L6|A|1637
7QVP|1|L6|A|1638
7QVP|1|L6|U|1639
7QVP|1|L6|C|1640

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MA

60S ribosomal protein L8

Chain MN

60S ribosomal protein L15

Chain MP

60S ribosomal protein L17

Chain Mj

Ribosomal protein L37