IL_7QVP_245
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7QVP|1|L6|U|1930, 7QVP|1|L6|C|1931, 7QVP|1|L6|G|2055, 7QVP|1|L6|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_245 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.2646
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|L6|C|1926
7QVP|1|L6|U|1927
7QVP|1|L6|C|1928
7QVP|1|L6|A|1929
7QVP|1|L6|U|1930
7QVP|1|L6|C|1931
7QVP|1|L6|A|1932
7QVP|1|L6|G|1933
*
7QVP|1|L6|C|2053
7QVP|1|L6|U|2054
7QVP|1|L6|G|2055
7QVP|1|L6|G|2056
7QVP|1|L6|A|2057
7QVP|1|L6|G|2058
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MH
- 60S ribosomal protein L9
- Chain MO
- 60S ribosomal protein L13a
- Chain MS
- 60S ribosomal protein L18a
- Chain Mm
- Ubiquitin-60S ribosomal protein L40
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