IL_7QVP_255

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_255 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0874

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7QVP|1|L6|G|2358
7QVP|1|L6|U|2359
7QVP|1|L6|A|2360
7QVP|1|L6|G|2361
7QVP|1|L6|U|2362
7QVP|1|L6|A|2363
7QVP|1|L6|G|2364
*
7QVP|1|L6|C|3858
7QVP|1|L6|G|3859
7QVP|1|L6|A|3860
7QVP|1|L6|A|3861
7QVP|1|L6|A|3862
7QVP|1|L6|C|3863

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L4

Chain MP

60S ribosomal protein L17