IL_7QVP_262

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_262 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2341

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7QVP|1|L6|C|2589
7QVP|1|L6|G|2590
7QVP|1|L6|A|2591
7QVP|1|L6|U|2592
7QVP|1|L6|C|2593
*
7QVP|1|L6|G|2752
7QVP|1|L6|G|2753
7QVP|1|L6|G|2754
7QVP|1|L6|A|2755
7QVP|1|L6|G|2756

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MA

60S ribosomal protein L8

Chain MZ

60S ribosomal protein L27

Chain Mg

60S ribosomal protein L34