IL_7QVP_277
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 7QVP|1|L6|A|3663, 7QVP|1|L6|U|3679, 7QVP|1|L6|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_277 not in the Motif Atlas
- Homologous match to IL_8C3A_088
- Geometric discrepancy: 0.0922
- The information below is about IL_8C3A_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QVP|1|L6|C|3660
7QVP|1|L6|G|3661
7QVP|1|L6|A|3662
7QVP|1|L6|A|3663
7QVP|1|L6|G|3664
7QVP|1|L6|G|3665
*
7QVP|1|L6|U|3677
7QVP|1|L6|G|3678
7QVP|1|L6|U|3679
7QVP|1|L6|U|3680
7QVP|1|L6|G|3681
7QVP|1|L6|A|3682
7QVP|1|L6|C|3683
7QVP|1|L6|G|3684
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MA
- 60S ribosomal protein L8
- Chain Mp
- 60S ribosomal protein L37a
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
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