IL_7QVP_310

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_310 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1282

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QVP|1|L6|C|4596
7QVP|1|L6|U|4597
7QVP|1|L6|C|4598
7QVP|1|L6|A|4599
7QVP|1|L6|G|4600
7QVP|1|L6|U|4601
7QVP|1|L6|A|4602
7QVP|1|L6|C|4603
*
7QVP|1|L6|G|4608
7QVP|1|L6|G|4609
7QVP|1|L6|A|4610
7QVP|1|L6|A|4611
7QVP|1|L6|C|4612
7QVP|1|L6|C|4613
7QVP|1|L6|G|4614

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MH

60S ribosomal protein L9

Chain MV

60S ribosomal protein L23