IL_7QVP_312

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7QVP|1|L6|U|4634, 7QVP|1|L6|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_312 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.3009

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7QVP|1|L6|U|4632
7QVP|1|L6|G|4633
7QVP|1|L6|U|4634
7QVP|1|L6|A|4635
7QVP|1|L6|U|4636
7QVP|1|L6|G|4637
*
7QVP|1|L6|C|4662
7QVP|1|L6|G|4663
7QVP|1|L6|A|4664
7QVP|1|L6|A|4665
7QVP|1|L6|G|4666

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MB

60S ribosomal protein L3

Chain MW

60S ribosomal protein L24

Chain Md

60S ribosomal protein L31