IL_7QVP_469
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7QVP|1|S3|A|628, 7QVP|1|S3|U|630, 7QVP|1|S3|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_469 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1523
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S3|G|611
7QVP|1|S3|U|612
7QVP|1|S3|G|613
7QVP|1|S3|C|614
7QVP|1|S3|C|615
7QVP|1|S3|A|616
7QVP|1|S3|G|617
*
7QVP|1|S3|C|624
7QVP|1|S3|G|625
7QVP|1|S3|G|626
7QVP|1|S3|U|627
7QVP|1|S3|A|628
7QVP|1|S3|A|629
7QVP|1|S3|U|630
7QVP|1|S3|U|631
7QVP|1|S3|C|632
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain A5
- mRNA
- Chain D5
- Transfer RNA; tRNA
- Chain RD
- 40S ribosomal protein S3
- Chain RX
- 40S ribosomal protein S23
- Chain Re
- 40S ribosomal protein S30
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