IL_7QVP_471

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7QVP|1|S3|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_471 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.1517

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7QVP|1|S3|G|665
7QVP|1|S3|U|666
7QVP|1|S3|U|667
7QVP|1|S3|A|668
7QVP|1|S3|A|669
7QVP|1|S3|A|670
7QVP|1|S3|A|671
*
7QVP|1|S3|U|1161
7QVP|1|S3|C|1162

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RX

40S ribosomal protein S23

Chain Ra

40S ribosomal protein S26