IL_7QVP_484

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QVP_484 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1008

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7QVP|1|S3|G|928
7QVP|1|S3|G|929
7QVP|1|S3|C|930
7QVP|1|S3|C|931
*
7QVP|1|S3|G|1010
7QVP|1|S3|A|1011
7QVP|1|S3|A|1012
7QVP|1|S3|U|1013

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RB

40S ribosomal protein S3a

Chain RN

40S ribosomal protein S13

Chain Rb

40S ribosomal protein S27