IL_7QVP_486
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QVP_486 not in the Motif Atlas
- Geometric match to IL_4V88_432
- Geometric discrepancy: 0.0919
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7QVP|1|S3|G|942
7QVP|1|S3|U|943
7QVP|1|S3|A|944
7QVP|1|S3|U|945
*
7QVP|1|S3|A|981
7QVP|1|S3|G|982
7QVP|1|S3|A|983
7QVP|1|S3|C|984
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain MA
- 60S ribosomal protein L8
- Chain Mp
- 60S ribosomal protein L37a
- Chain RB
- 40S ribosomal protein S3a
- Chain RO
- 40S ribosomal protein S14
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