IL_7QWQ_162

3D structure

PDB id

7QWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of ribosome nascent chain with SRP and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGGG*CACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QWQ_162 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2046

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7QWQ|1|5|U|4991
7QWQ|1|5|G|4992
7QWQ|1|5|G|4993
7QWQ|1|5|G|4994
*
7QWQ|1|5|C|5057
7QWQ|1|5|A|5058
7QWQ|1|5|C|5059
7QWQ|1|5|A|5060

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

Signal recognition particle RNA; SRP RNA

Chain B

uL3

Chain d

Ribosomal protein L31