3D structure

PDB id
7S1H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic linezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
7S1H|1|C|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7S1H_036 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0723
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

7S1H|1|C|U|684
7S1H|1|C|G|685
7S1H|1|C|U|686
7S1H|1|C|A|687
7S1H|1|C|G|688
*
7S1H|1|C|C|699
7S1H|1|C|G|700
7S1H|1|C|U|701
7S1H|1|C|A|702
7S1H|1|C|G|703
7S1H|1|C|A|704
7S1H|1|C|G|705
7S1H|1|C|A|706

Current chains

Chain C
16S rRNA

Nearby chains

Chain I
Large subunit ribosomal RNA; LSU rRNA
Chain r
30S ribosomal protein S11

Coloring options:


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