IL_7SUK_006
3D structure
- PDB id
- 7SUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- AUUU*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SUK_006 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.2091
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7SUK|1|8|A|206
7SUK|1|8|U|207
7SUK|1|8|U|208
7SUK|1|8|U|209
*
7SUK|1|8|A|256
7SUK|1|8|A|257
7SUK|1|8|C|258
7SUK|1|8|U|259
Current chains
- Chain 8
- 18S pre-rRNA
Nearby chains
- Chain L4
- 40S ribosomal protein S4-A
- Chain L8
- 40S ribosomal protein S8-A
- Chain LD
- 40S ribosomal protein S11-A
- Chain SP
- U3 small nucleolar RNA-associated protein 20
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