IL_7SYH_005

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCUAAG*CUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_005 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.394

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7SYH|1|2|G|56
7SYH|1|2|U|57
7SYH|1|2|C|58
7SYH|1|2|U|59
7SYH|1|2|A|60
7SYH|1|2|A|61
7SYH|1|2|G|62
*
7SYH|1|2|C|86
7SYH|1|2|U|87
7SYH|1|2|G|88
7SYH|1|2|C|89

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain Z

40S ribosomal protein S24