IL_7SYH_031

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7SYH|1|2|U|627, 7SYH|1|2|A|628, 7SYH|1|2|U|630, 7SYH|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7SYH_031 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2553

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7SYH|1|2|G|611
7SYH|1|2|U|612
7SYH|1|2|G|613
7SYH|1|2|C|614
7SYH|1|2|C|615
7SYH|1|2|A|616
7SYH|1|2|G|617
*
7SYH|1|2|C|624
7SYH|1|2|G|625
7SYH|1|2|G|626
7SYH|1|2|U|627
7SYH|1|2|A|628
7SYH|1|2|A|629
7SYH|1|2|U|630
7SYH|1|2|U|631
7SYH|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain Y

uS12

Chain f

eS30