IL_7SYV_033
3D structure
- PDB id
- 7SYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7SYV|1|2|A|628, 7SYV|1|2|U|630, 7SYV|1|2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7SYV_033 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2296
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7SYV|1|2|G|611
7SYV|1|2|U|612
7SYV|1|2|G|613
7SYV|1|2|C|614
7SYV|1|2|C|615
7SYV|1|2|A|616
7SYV|1|2|G|617
*
7SYV|1|2|C|624
7SYV|1|2|G|625
7SYV|1|2|G|626
7SYV|1|2|U|627
7SYV|1|2|A|628
7SYV|1|2|A|629
7SYV|1|2|U|630
7SYV|1|2|U|631
7SYV|1|2|C|632
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain E
- uS3
- Chain Y
- uS12
- Chain f
- eS30
- Chain z
- Internal ribosome entry site; IRES
Coloring options: