IL_7TOQ_031
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGAUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7TOQ|1|A18S|A|628, 7TOQ|1|A18S|U|630
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_031 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3096
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7TOQ|1|A18S|G|611
7TOQ|1|A18S|U|612
7TOQ|1|A18S|G|613
7TOQ|1|A18S|C|614
7TOQ|1|A18S|C|615
7TOQ|1|A18S|A|616
7TOQ|1|A18S|G|617
*
7TOQ|1|A18S|C|624
7TOQ|1|A18S|G|625
7TOQ|1|A18S|A|626
7TOQ|1|A18S|U|627
7TOQ|1|A18S|A|628
7TOQ|1|A18S|A|629
7TOQ|1|A18S|U|630
7TOQ|1|A18S|U|631
7TOQ|1|A18S|C|632
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS03
- 40S ribosomal protein S3
- Chain AS23
- 40S ribosomal protein S23
- Chain AS30
- 40S ribosomal protein S30
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
Coloring options: