IL_7TOQ_047
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 7TOQ|1|A18S|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_047 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.3071
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7TOQ|1|A18S|G|952
7TOQ|1|A18S|C|953
7TOQ|1|A18S|U|954
7TOQ|1|A18S|A|955
7TOQ|1|A18S|G|956
*
7TOQ|1|A18S|C|967
7TOQ|1|A18S|U|968
7TOQ|1|A18S|U|969
7TOQ|1|A18S|G|970
7TOQ|1|A18S|G|971
7TOQ|1|A18S|A|972
7TOQ|1|A18S|C|973
7TOQ|1|A18S|C|974
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS01
- 40S ribosomal protein S3a
- Chain AS14
- 40S ribosomal protein S14
Coloring options: