IL_7TOQ_165
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 7TOQ|1|A25S|U|1930, 7TOQ|1|A25S|C|1931, 7TOQ|1|A25S|G|2055, 7TOQ|1|A25S|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_165 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1717
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7TOQ|1|A25S|C|1926
7TOQ|1|A25S|U|1927
7TOQ|1|A25S|C|1928
7TOQ|1|A25S|A|1929
7TOQ|1|A25S|U|1930
7TOQ|1|A25S|C|1931
7TOQ|1|A25S|A|1932
7TOQ|1|A25S|G|1933
*
7TOQ|1|A25S|C|2053
7TOQ|1|A25S|U|2054
7TOQ|1|A25S|G|2055
7TOQ|1|A25S|G|2056
7TOQ|1|A25S|A|2057
7TOQ|1|A25S|G|2058
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL09
- 60S ribosomal protein L9
- Chain AL14
- 60S ribosomal protein L14
- Chain AL16
- uL13
- Chain AL20
- eL20
- Chain AL40
- eL40
Coloring options: