IL_7TOQ_180

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_180 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2795

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7TOQ|1|A25S|C|2589
7TOQ|1|A25S|G|2590
7TOQ|1|A25S|A|2591
7TOQ|1|A25S|U|2592
7TOQ|1|A25S|C|2593
*
7TOQ|1|A25S|G|2752
7TOQ|1|A25S|G|2753
7TOQ|1|A25S|G|2754
7TOQ|1|A25S|A|2755
7TOQ|1|A25S|G|2756

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL02

uL2

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34