IL_7TOQ_233

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

7TOQ|1|A25S|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_233 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1576

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7TOQ|1|A25S|C|4582
7TOQ|1|A25S|C|4583
7TOQ|1|A25S|A|4584
7TOQ|1|A25S|U|4585
*
7TOQ|1|A25S|A|4717
7TOQ|1|A25S|G|4718
7TOQ|1|A25S|G|4719
7TOQ|1|A25S|C|4720
7TOQ|1|A25S|G|4721

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

uL13