IL_7TOQ_243

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_243 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.3832

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TOQ|1|A25S|G|4769
7TOQ|1|A25S|U|4770
7TOQ|1|A25S|C|4771
7TOQ|1|A25S|C|4772
7TOQ|1|A25S|C|4773
*
7TOQ|1|A25S|G|4862
7TOQ|1|A25S|G|4863
7TOQ|1|A25S|U|4864
7TOQ|1|A25S|C|4865

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

uL13