IL_7TOQ_244

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_244 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2869

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7TOQ|1|A25S|U|4885
7TOQ|1|A25S|C|4886
7TOQ|1|A25S|C|4887
7TOQ|1|A25S|C|4888
*
7TOQ|1|A25S|G|4931
7TOQ|1|A25S|U|4932
7TOQ|1|A25S|C|4933
7TOQ|1|A25S|A|4934

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL14

60S ribosomal protein L14