IL_7TOQ_268

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

7TOQ|1|A18S|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_268 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4259

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7TOQ|1|A18S|G|924
7TOQ|1|A18S|G|925
7TOQ|1|A18S|A|926
*
7TOQ|1|A18S|U|1015
7TOQ|1|A18S|U|1016
7TOQ|1|A18S|U|1017
7TOQ|1|A18S|U|1018

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS22

40S ribosomal protein S15a

Chain AS27

40S ribosomal protein S27