IL_7TOQ_272
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7TOQ|1|A18S|C|1331, 7TOQ|1|A18S|U|1494, 7TOQ|1|A18S|G|1497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_272 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1452
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7TOQ|1|A18S|U|1329
7TOQ|1|A18S|G|1330
7TOQ|1|A18S|C|1331
7TOQ|1|A18S|A|1332
7TOQ|1|A18S|U|1333
7TOQ|1|A18S|G|1334
7TOQ|1|A18S|G|1335
*
7TOQ|1|A18S|U|1492
7TOQ|1|A18S|C|1493
7TOQ|1|A18S|U|1494
7TOQ|1|A18S|G|1495
7TOQ|1|A18S|U|1496
7TOQ|1|A18S|G|1497
7TOQ|1|A18S|A|1498
7TOQ|1|A18S|U|1499
7TOQ|1|A18S|G|1500
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS03
- 40S ribosomal protein S3
- Chain AS10
- 40S ribosomal protein S10
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
Coloring options: