IL_7TOS_014
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 7TOS|1|16S|U|244, 7TOS|1|16S|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_014 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.2005
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7TOS|1|16S|G|242
7TOS|1|16S|A|243
7TOS|1|16S|U|244
7TOS|1|16S|U|245
7TOS|1|16S|A|246
7TOS|1|16S|G|247
*
7TOS|1|16S|C|277
7TOS|1|16S|G|278
7TOS|1|16S|A|279
7TOS|1|16S|C|280
7TOS|1|16S|G|281
7TOS|1|16S|A|282
7TOS|1|16S|U|283
7TOS|1|16S|C|284
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S12
- 30S ribosomal protein S12
- Chain S17
- 30S ribosomal protein S17
Coloring options: