IL_7TOS_025
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7TOS|1|16S|A|532, 7TOS|1|16S|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1898
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7TOS|1|16S|G|515
7TOS|1|16S|U|516
7TOS|1|16S|G|517
7TOS|1|16S|C|518
7TOS|1|16S|C|519
7TOS|1|16S|A|520
7TOS|1|16S|G|521
*
7TOS|1|16S|C|528
7TOS|1|16S|G|529
7TOS|1|16S|G|530
7TOS|1|16S|U|531
7TOS|1|16S|A|532
7TOS|1|16S|A|533
7TOS|1|16S|U|534
7TOS|1|16S|A|535
7TOS|1|16S|C|536
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S03
- 30S ribosomal protein S3
- Chain S04
- 30S ribosomal protein S4
- Chain S12
- 30S ribosomal protein S12
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