IL_7TOS_054

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

7TOS|1|16S|A|1257, 7TOS|1|16S|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_054 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.273

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOS|1|16S|G|1255
7TOS|1|16S|A|1256
7TOS|1|16S|A|1257
7TOS|1|16S|G|1258
*
7TOS|1|16S|C|1277
7TOS|1|16S|G|1278
7TOS|1|16S|G|1279
7TOS|1|16S|A|1280
7TOS|1|16S|C|1281
7TOS|1|16S|C|1282

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S03

30S ribosomal protein S3

Chain S10

30S ribosomal protein S10

Chain S14

30S ribosomal protein S14