IL_7TOS_056

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1766

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7TOS|1|16S|C|1303
7TOS|1|16S|G|1304
7TOS|1|16S|G|1305
7TOS|1|16S|A|1306
7TOS|1|16S|U|1307
7TOS|1|16S|U|1308
*
7TOS|1|16S|A|1329
7TOS|1|16S|U|1330
7TOS|1|16S|G|1331
7TOS|1|16S|A|1332
7TOS|1|16S|A|1333
7TOS|1|16S|G|1334

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S13

30S ribosomal protein S13