IL_7TOS_104
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 7TOS|1|23S|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_104 not in the Motif Atlas
- Geometric match to IL_5TBW_054
- Geometric discrepancy: 0.2578
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7TOS|1|23S|C|1043
7TOS|1|23S|C|1044
7TOS|1|23S|C|1045
7TOS|1|23S|A|1046
7TOS|1|23S|G|1047
7TOS|1|23S|A|1048
7TOS|1|23S|C|1049
7TOS|1|23S|A|1050
7TOS|1|23S|G|1051
*
7TOS|1|23S|U|1108
7TOS|1|23S|C|1109
7TOS|1|23S|G|1110
7TOS|1|23S|A|1111
7TOS|1|23S|G|1112
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L06
- 50S ribosomal protein L6
- Chain L10
- 50S ribosomal protein L10
- Chain L36
- 50S ribosomal protein L36
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