IL_7TOS_134

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7TOS|1|23S|A|1801, 7TOS|1|23S|C|1816, 7TOS|1|23S|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_134 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7TOS|1|23S|U|1798
7TOS|1|23S|G|1799
7TOS|1|23S|C|1800
7TOS|1|23S|A|1801
7TOS|1|23S|A|1802
7TOS|1|23S|A|1803
7TOS|1|23S|C|1804
*
7TOS|1|23S|G|1813
7TOS|1|23S|G|1814
7TOS|1|23S|A|1815
7TOS|1|23S|C|1816
7TOS|1|23S|G|1817
7TOS|1|23S|U|1818
7TOS|1|23S|A|1819
7TOS|1|23S|U|1820
7TOS|1|23S|A|1821

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 16S

Small subunit ribosomal RNA; SSU rRNA

Chain L02

50S ribosomal protein L2