IL_7TOS_167

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

7TOS|1|23S|U|2689, 7TOS|1|23S|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_167 not in the Motif Atlas

Geometric match to IL_5J7L_348

Geometric discrepancy: 0.098

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7TOS|1|23S|U|2687
7TOS|1|23S|G|2688
7TOS|1|23S|U|2689
7TOS|1|23S|U|2690
7TOS|1|23S|C|2691
*
7TOS|1|23S|G|2718
7TOS|1|23S|G|2719
7TOS|1|23S|U|2720
7TOS|1|23S|A|2721
7TOS|1|23S|G|2722

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L17

50S ribosomal protein L17

Chain L19

50S ribosomal protein L19