IL_7UNU_037

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

7UNU|1|A|C|1132, 7UNU|1|A|A|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNU_037 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7UNU|1|A|U|1008
7UNU|1|A|U|1009
7UNU|1|A|A|1010
7UNU|1|A|A|1011
7UNU|1|A|G|1012
7UNU|1|A|U|1013
7UNU|1|A|G|1014
*
7UNU|1|A|C|1130
7UNU|1|A|U|1131
7UNU|1|A|C|1132
7UNU|1|A|A|1133
7UNU|1|A|A|1134
7UNU|1|A|A|1135

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain L

50S ribosomal protein L13