IL_7UNV_067

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAG*CGUAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_067 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3728

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7UNV|1|A|U|1708
7UNV|1|A|G|1709
7UNV|1|A|A|1710
7UNV|1|A|A|1711
7UNV|1|A|G|1712
*
7UNV|1|A|C|1722
7UNV|1|A|G|1723
7UNV|1|A|U|1724
7UNV|1|A|A|1725
7UNV|1|A|A|1726
7UNV|1|A|G|1727

Current chains

Chain A

23S Ribosomal RNA

Nearby chains