IL_7UNV_069

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UNV|1|A|A|1788, 7UNV|1|A|C|1803, 7UNV|1|A|U|1807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_069 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0766

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UNV|1|A|U|1785
7UNV|1|A|G|1786
7UNV|1|A|C|1787
7UNV|1|A|A|1788
7UNV|1|A|A|1789
7UNV|1|A|A|1790
7UNV|1|A|C|1791
*
7UNV|1|A|G|1800
7UNV|1|A|G|1801
7UNV|1|A|A|1802
7UNV|1|A|C|1803
7UNV|1|A|G|1804
7UNV|1|A|U|1805
7UNV|1|A|A|1806
7UNV|1|A|U|1807
7UNV|1|A|A|1808

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA