3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
7UPH|1|I|U|243, 7UPH|1|I|C|279
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_013 not in the Motif Atlas
Geometric match to IL_4V88_402
Geometric discrepancy: 0.2813
The information below is about IL_4V88_402
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7UPH|1|I|G|241
7UPH|1|I|A|242
7UPH|1|I|U|243
7UPH|1|I|U|244
7UPH|1|I|A|245
7UPH|1|I|G|246
*
7UPH|1|I|C|276
7UPH|1|I|G|277
7UPH|1|I|A|278
7UPH|1|I|C|279
7UPH|1|I|G|280
7UPH|1|I|A|281
7UPH|1|I|U|282
7UPH|1|I|C|283

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain D
30S ribosomal protein S17
Chain g
30S ribosomal protein S12

Coloring options:


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