IL_7UPH_013
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 7UPH|1|I|U|243, 7UPH|1|I|C|279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_013 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.2813
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7UPH|1|I|G|241
7UPH|1|I|A|242
7UPH|1|I|U|243
7UPH|1|I|U|244
7UPH|1|I|A|245
7UPH|1|I|G|246
*
7UPH|1|I|C|276
7UPH|1|I|G|277
7UPH|1|I|A|278
7UPH|1|I|C|279
7UPH|1|I|G|280
7UPH|1|I|A|281
7UPH|1|I|U|282
7UPH|1|I|C|283
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S17
- Chain g
- 30S ribosomal protein S12
Coloring options: