3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
7UPH|1|I|U|631
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_029 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.2624
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7UPH|1|I|U|604
7UPH|1|I|G|605
7UPH|1|I|A|606
7UPH|1|I|A|607
7UPH|1|I|A|608
7UPH|1|I|U|609
7UPH|1|I|C|610
7UPH|1|I|C|611
*
7UPH|1|I|G|627
7UPH|1|I|A|628
7UPH|1|I|A|629
7UPH|1|I|C|630
7UPH|1|I|U|631
7UPH|1|I|G|632

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain C
30S ribosomal protein S16
Chain Y
30S ribosomal protein S4
Chain c
30S ribosomal protein S8

Coloring options:


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