IL_7UPH_029

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

7UPH|1|I|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_029 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.2624

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|U|604
7UPH|1|I|G|605
7UPH|1|I|A|606
7UPH|1|I|A|607
7UPH|1|I|A|608
7UPH|1|I|U|609
7UPH|1|I|C|610
7UPH|1|I|C|611
*
7UPH|1|I|G|627
7UPH|1|I|A|628
7UPH|1|I|A|629
7UPH|1|I|C|630
7UPH|1|I|U|631
7UPH|1|I|G|632

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16

Chain Y

30S ribosomal protein S4

Chain c

30S ribosomal protein S8