IL_7UPH_034

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7UPH|1|I|A|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_034 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2213

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7UPH|1|I|U|683
7UPH|1|I|G|684
7UPH|1|I|U|685
7UPH|1|I|A|686
7UPH|1|I|G|687
*
7UPH|1|I|C|698
7UPH|1|I|G|699
7UPH|1|I|U|700
7UPH|1|I|A|701
7UPH|1|I|G|702
7UPH|1|I|A|703
7UPH|1|I|G|704
7UPH|1|I|A|705

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain f

30S ribosomal protein S11