IL_7UPH_039

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

7UPH|1|I|G|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_039 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1712

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7UPH|1|I|C|923
7UPH|1|I|G|924
7UPH|1|I|G|925
7UPH|1|I|G|926
*
7UPH|1|I|U|1389
7UPH|1|I|U|1390
7UPH|1|I|G|1391

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain Z

30S ribosomal protein S5