IL_7UPH_052
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 7UPH|1|I|A|1256, 7UPH|1|I|A|1279, 7UPH|1|I|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_052 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.2475
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UPH|1|I|G|1254
7UPH|1|I|A|1255
7UPH|1|I|A|1256
7UPH|1|I|G|1257
*
7UPH|1|I|C|1276
7UPH|1|I|G|1277
7UPH|1|I|G|1278
7UPH|1|I|A|1279
7UPH|1|I|C|1280
7UPH|1|I|C|1281
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain A
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S10
Coloring options: