IL_7UPH_060

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_060 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.2011

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|A|1429
7UPH|1|I|A|1430
7UPH|1|I|G|1431
7UPH|1|I|A|1432
7UPH|1|I|A|1433
7UPH|1|I|G|1434
*
7UPH|1|I|C|4370
7UPH|1|I|C|4371
7UPH|1|I|A|4372
7UPH|1|I|C|4373
7UPH|1|I|U|4374

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain G

30S ribosomal protein S20

Chain o

50S ribosomal protein L19