IL_7UPH_068

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_068 not in the Motif Atlas

Geometric match to IL_7A0S_001

Geometric discrepancy: 0.2407

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|1524
7UPH|1|I|U|1525
7UPH|1|I|G|1526
7UPH|1|I|G|1527
7UPH|1|I|A|1528
7UPH|1|I|U|1529
7UPH|1|I|G|1530
*
7UPH|1|I|C|2010
7UPH|1|I|U|2011
7UPH|1|I|G|2012
7UPH|1|I|A|2013
7UPH|1|I|A|2014
7UPH|1|I|A|2015
7UPH|1|I|C|2016

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain p

50S ribosomal protein L20

Chain r

50S ribosomal protein L22