3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_073 not in the Motif Atlas
Geometric match to IL_8C3A_065
Geometric discrepancy: 0.2809
The information below is about IL_8C3A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7UPH|1|I|C|1739
7UPH|1|I|C|1740
7UPH|1|I|A|1741
7UPH|1|I|G|1742
7UPH|1|I|U|1743
7UPH|1|I|A|1744
7UPH|1|I|G|1745
*
7UPH|1|I|C|1753
7UPH|1|I|G|1754
7UPH|1|I|A|1755
7UPH|1|I|A|1756
7UPH|1|I|C|1757
7UPH|1|I|G|1758

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain T
50S ribosomal protein L15
Chain l
50S ribosomal protein L35

Coloring options:


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