IL_7UPH_108

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGUUCU*AGAAGUG

Length

13 nucleotides

Bulged bases

7UPH|1|I|G|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_108 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3271

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|C|2690
7UPH|1|I|G|2691
7UPH|1|I|U|2692
7UPH|1|I|U|2693
7UPH|1|I|C|2694
7UPH|1|I|U|2695
*
7UPH|1|I|A|2738
7UPH|1|I|G|2739
7UPH|1|I|A|2740
7UPH|1|I|A|2741
7UPH|1|I|G|2742
7UPH|1|I|U|2743
7UPH|1|I|G|2744

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15

Chain p

50S ribosomal protein L20