3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_114 not in the Motif Atlas
Geometric match to IL_5TBW_048
Geometric discrepancy: 0.3118
The information below is about IL_5TBW_048
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

7UPH|1|I|C|2845
7UPH|1|I|U|2846
7UPH|1|I|A|2847
7UPH|1|I|A|2848
7UPH|1|I|G|2849
*
7UPH|1|I|C|2870
7UPH|1|I|G|2871
7UPH|1|I|A|2872
7UPH|1|I|U|2873
7UPH|1|I|G|2874

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain K
50S ribosomal protein L2
Chain k
50S ribosomal protein L34

Coloring options:


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